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Posts Tagged ‘history’

Laws regarding first-cousin marriage around the world. Navy blue: First-cousin marriage legal. Light Blue: Allowed with restrictions or exceptions. Yellow: Legality dependent on religion or culture. Red: Statute bans first-cousin marriage. Pink: Banned with exceptions. Dark Red: Criminal offense. Grey: No available data. The image has been released into the public domain by the author (URL: http://en.wikipedia.org/wiki/Cousin_marriage).

Laws regarding first-cousin marriage around the world. Navy blue: First-cousin marriage legal. Light Blue: Allowed with restrictions or exceptions. Yellow: Legality dependent on religion or culture. Red: Statute bans first-cousin marriage. Pink: Banned with exceptions. Dark Red: Criminal offense. Grey: No available data. The image has been released into the public domain by the author (URL: http://en.wikipedia.org/wiki/Cousin_marriage).

The answer is (studying) consanguinity (i.e. unions between relatives such as first-cousin marriages); and one cannot understand the complexity of the issue (and make ‘informed’ decisions) without reading the literature of these five apparently unconnected fields. It is fair to say that there is a degree of hostility towards consanguineous marriages in Western societies. However this perception is usually attained without in-depth knowledge on the genetic effects of consanguinity. In short, consanguinity per se (i.e. on its own) does not cause a disorder, but rather it increases the probability of an autosomal recessive disorder (which require two copies of the same) causal mutation to be in a homozygous state (i.e. possess two copies of the same mutation). When this happens both copies of the genes we inherited from our parents do not function properly.

Unions between individuals who are second-cousins or closer are considered ‘consanguineous’ in clinical genetics. Consanguineous families with diseases have been studied thoroughly by clinical geneticists for the last two-three decades – and this has allowed for identification of many disease causal genes. However, studying consanguineous populations as a whole rather than ‘cherry picking’ families with disease can offer much more for better understanding our genome and therefore finding new targets for preventive and curative medicine. Many genes in our genome still have unknown functions and we have merely scratched the surface in terms of their interactions. I hypothesise that assigning a function to the thousands of remaining genes will only be feasible if consanguineous populations are studied as a whole (i.e. also including families without disease to the studies) and I therefore carry out theoretical studies to estimate the sample size needed and how many genes will be completely ‘knocked-out’ if these studies were to be carried out. This approach proposes a ‘paradigm shift’ in clinical genetics.

Global prevalence of consanguineous unions. Consanguinity has deep roots in many cultures and it is impossible to interfere/intervene from the outside without first understanding why people engage in cousin marriages. Image source URL: www.consang.net/

Global prevalence of consanguineous unions. Consanguinity has deep roots in many cultures and it is impossible to interfere/intervene from the outside without first understanding why people engage in cousin marriages. Image source URL: http://www.consang.net/

Consanguineous unions occur very rarely in Western countries for a variety of sociological (e.g. cultural, negative media coverage) and statistical reasons (e.g. smaller families means fewer cousins at similar age), but the complete opposite is true in certain regions of the world where union of kin is seen as the default choice. Conservative estimates predict that approximately one-sixth of the world’s population (a figure of 1.1 billion is proposed by the Geneva International Consanguinity Workshop Report) live in highly consanguineous regions; and also another one-sixth falls into the ‘unknown’ category – reflecting the need for further research. Historically, consanguineous unions were also common amongst the elite in the UK (up to mid-19th century, including Charles Darwin), the Pharaohs and the Royal families of Europe (e.g. Habsburgs).

Views of main religions towards consanguineous marriages. NB: Where first-cousin marriages are allowed, lower levels of consanguinity are also allowed. Image Source: Copy-pasted from my own PhD thesis

The increase in the probability of a mutation being homozygous will depend on the level of relatedness between the parents. For example, approximately 6.25% of mutations are expected to be homozygous in the offspring of first cousins. This figure would be (near) 0% in the offspring of outbred individuals. Genetically, this is the main difference between union of kin and union of unrelated individuals. We all have many disease-causal mutations in our genomes (but in heterozygous state, i.e. one normal copy and one mutated copy) and different kinds of mutations are out there in all populations. However because these mutations will be very rare or are unique to you or your family, they do not get to meet their counterpart when you have offspring with an unrelated individual. Therefore the mutation’s homozygous effects are never observed. This is why rare autosomal recessive disorders are almost always seen in consanguineous offspring.

This difference in homozygosity levels is also one of the main reasons behind the necessity of studying consanguineous individuals and populations. These studies can turn unfortunate events (e.g. disorder in families) to a great use for medical sciences. Not only will identifying a disease-causal mutation help with diagnostics, they can enable scientists to understand what certain genes do and help us understand why the gene causes that disease. Rare instances can be highly informative about preventable outcomes relevant to the whole population. For example, had more notice been taken in the 1980s of the proof which familial hypercholesterolemia provided for the causal role of cholesterol in coronary heart disease (CHD), high cholesterol intake would have been better addressed for the nation a decade sooner. To provide numbers, CHD is still the UK’s biggest killer causing over 80 thousand deaths a year, thus paying more attention to information that was coming from studies of consanguineous unions could have saved thousands of lives just in this single case.

Given the advancements in genetic diagnostics (e.g. huge decreases in costs of DNA sequencing), screening for all known mutations will become feasible in the near future for everybody – and identifying disease-causal mutations will become even more useful for all of us. Our genomes are constantly being mutated and my approach will enable a much broader understanding of our genome by observing these mutations’ homozygous effects. Finally, rather than discourage (See link for an example) consanguineous marriages totally (not feasible in the foreseeable future due to many socio-economic and cultural reasons), for those willing to marry a cousin, screening for previously identified mutations will help these couples take more informed decisions.

consanguinity factors culture socio-economic

Factors influenced by consanguinity and culture. Image Source: Copy-pasted from my own PhD thesis (hence the Figure 1.10)

Key reference:

A. Mesut Erzurumluoglu, 2016. Population and family based studies of consanguinity: Genetic and Computational approaches. PhD thesis. University of Bristol.

Erzurumluoglu AM et al, 2016. Importance of Genetic Studies in Consanguineous Populations for the Characterization of Novel Human Gene Functions. Annals of Human Genetics, 80: 187–196.

 

PS: Whilst the media is mostly responsible for portraying consanguinity the way they understand (and with more contrast added on of course), they could be forgiven as the genetic effects of consanguinity is not fully understood amongst geneticists either, especially in the field of complex trait genetics – thus the extra incentive for studying them.

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Suleiman 'The Magnificent'

Suleiman ‘The Magnificent’

One day, the famous Ottoman Sultan Suleiman (aka ‘The Magnificent’) was taking a breather in one of the gardens of Topkapi Palace. Whilst observing the trees and contemplating about them (e.g. what a miracle of God they were!), he realised that one of them was surrounded by ants. He did not like the idea of ants feeding on his trees and thought of poisoning them. However he was a wise man and knew never to act in a hurry; thus he would always seek advice from the Sheikh-ul Islam of the time, Ebussuud Efendi. He expressed his intentions with a short poem (get a Turkish friend to read it for you):

 

Suleiman:

Meyve ağaçlarını sarınca karınca (When ants invade a tree)

Günah var mı karıncayı kırınca? (Is there permission to kill them?)

His advisor Ebussuud Efendi replied with this:

Yarın Hakk’ın divanına varınca (When the time to meet the Lord comes)

Süleyman’dan hakkın alır karınca. (Suleiman will be made to pay)

 

And the result was Suleiman, the greatest ruler at the time, could not kill the ants due to his fear of God Almighty. Today, some groups kill innocent people in the name Islam – I guess they understand Islam better than the Ottoman rulers and their advisors. Certainly not! They are deluded people being used by dark forces who want to bring chaos in to countries they’re interested in, serving their ultimate aim of stealing their underground resources and treasures.

Also Suleiman once said: I am God’s slave; and Sultan of this World! Ottoman Sultans took enormous pride from being a devout servant of God. We should take them as role models and not the individuals many teenagers look upon as ‘idols’ nowadays.

Click here to learn something new about another Ottoman Sultan…

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Some good programs and booklets produced by the Open University; which they’re giving away for free. Could also have a look at the programs they produce on BBC at the link:

http://www.open.edu/openlearn/whats-on/2012-on-openlearn

Free Booklet/Posters:

‘Andrew Marr’s History of the World’ booklet: http://www.open.edu/openlearn/whats-on/tv/get-your-free-how-do-they-know-booklet

‘Secrets of our Living Planet’ booklet: http://www.open.edu/openlearn/nature-environment/get-your-free-how-nature-works-booklet

‘British Empire’ poster: http://www.open.edu/openlearn/history-the-arts/history/social-economic-history/order-your-free-empire-poster

‘Icons of Wales’ booklet: http://www.open.edu/openlearn/history-the-arts/history/heritage/get-your-free-icons-wales-booklet

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DNA

Structure of DNA – the blueprint of all organisms

Deduction of Human migrations and Ancestry through the use of Uniparentally inherited DNA

Our genome is made up of 22 pairs of autosomes and 2 sex chromosomes making up a total of 46 chromosomes. We inherit half from our mother and the other from our father. If you receive an X from both your parents, you will become a female; and if you receive a Y from your father (you will always receive an X from your mother) you will be male. This makes the Y chromosome (excluding the pseudo-autosomal regions) the only nuclear chromomosome which is uniparentally inherited (males inherit it only from their fathers and females do not have it). Because it does not have a homologous pair (like the autosomes do), recombination does not occur thus no mix up of DNA sequences occur. This is why it is unique in the way that fathers pass on the same DNA sequence to their sons without any change (except for a few spontaneous mutations). So if we could go back in time and check the DNA sequence of the Y chromosome of your grandfather 20 generations back we would see that you have the same as his (apart from minor changes). This is why information through the analysis of the DNA sequence in the non-recombining regions can be used to deduce an individual’s ancestry (Jobling and Tyler Smith, 2003).

Information from the Non-recombining regions of the Y Chromosome

The Y chromosome of many males from all world populations have been analysed and a phylogenetic tree which is rooted to Africans has been constructed (Karafet et al 2008). The same is true for the mitochondrial DNA also (van Oven and Kayser, 2008). Each branch of the tree is called a ‘haplogroup’ which is the term used to describe a group of individuals who share the same Y-DNA haplotypes (or mitochondrial haplotypes in terms of the mtDNA phylogenetic tree), thus share a common ancestor some time in history (Underhill and Kivisild 2008).

European males usually belong to one of the two major Y-DNA haplogroups: R and I (see eupedia.org)

R is by far the most prevalent accounting to over 70% of males in Europe and I accounts for just over 20% (see eupedia.com for more information). What is intriguing however is that, through the analysis of the frequencies of the haplogroups in different regions of the world, haplogroup I seems to correspond to native Europeans whereas the R haplogroup seems to have arrived from Anatolia where present day Turkey is.

To conclude, there is definitely strong evidence that most European males share a common ancestor who lived in Turkey quite a few centuries ago. Human history is an intriguing area and genetics has a lot to offer to these studies!

Same for European languages?

Same for European languages?

For more information (ordered to help understand the issue better):

– Human Genome: http://en.wikipedia.org/wiki/Human_genome

– Y chromosome: http://en.wikipedia.org/wiki/Y_chromosome

– Mitochondrial DNA: http://en.wikipedia.org/wiki/Mitochondrial_DNA

– Origins, age, spread and ethnic association of European haplogroups and subclades: http://www.eupedia.com/europe/origins_haplogroups_europe.shtml

– Underhill PA, Kivisild T. 2007. Use of y chromosome and mitochondrial DNA population structure in tracing human migrations. Annu Rev Genet. 2007;41:539-64.

– Jobling MA, Tyler-Smith C. 2003. The human Y chromosome: an evolutionary marker comes of age. Nat Rev Genet. 2003 Aug;4(8):598-612.

– Karafet TM et al. 2008. New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res. 2008 May;18(5):830-8. Epub  2008 Apr 2.

– van Oven M, Kayser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat 30(2):E386-E394. http://www.phylotree.org.

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