Feeds:
Posts
Comments

Posts Tagged ‘middle east’

Laws regarding first-cousin marriage around the world. Navy blue: First-cousin marriage legal. Light Blue: Allowed with restrictions or exceptions. Yellow: Legality dependent on religion or culture. Red: Statute bans first-cousin marriage. Pink: Banned with exceptions. Dark Red: Criminal offense. Grey: No available data. The image has been released into the public domain by the author (URL: http://en.wikipedia.org/wiki/Cousin_marriage).

Laws regarding first-cousin marriage around the world. Navy blue: First-cousin marriage legal. Light Blue: Allowed with restrictions or exceptions. Yellow: Legality dependent on religion or culture. Red: Statute bans first-cousin marriage. Pink: Banned with exceptions. Dark Red: Criminal offense. Grey: No available data. The image has been released into the public domain by the author (URL: http://en.wikipedia.org/wiki/Cousin_marriage).

The answer is (studying) consanguinity (i.e. unions between relatives such as first-cousin marriages); and one cannot understand the complexity of the issue (and make ‘informed’ decisions) without reading the literature of these five apparently unconnected fields. It is fair to say that there is a degree of hostility towards consanguineous marriages in Western societies. However this perception is usually attained without in-depth knowledge on the genetic effects of consanguinity. In short, consanguinity per se (i.e. on its own) does not cause a disorder, but rather it increases the probability of an autosomal recessive disorder (which require two copies of the same) causal mutation to be in a homozygous state (i.e. possess two copies of the same mutation). When this happens both copies of the genes we inherited from our parents do not function properly.

Unions between individuals who are second-cousins or closer are considered ‘consanguineous’ in clinical genetics. Consanguineous families with diseases have been studied thoroughly by clinical geneticists for the last two-three decades – and this has allowed for identification of many disease causal genes. However, studying consanguineous populations as a whole rather than ‘cherry picking’ families with disease can offer much more for better understanding our genome and therefore finding new targets for preventive and curative medicine. Many genes in our genome still have unknown functions and we have merely scratched the surface in terms of their interactions. I hypothesise that assigning a function to the thousands of remaining genes will only be feasible if consanguineous populations are studied as a whole (i.e. also including families without disease to the studies) and I therefore carry out theoretical studies to estimate the sample size needed and how many genes will be completely ‘knocked-out’ if these studies were to be carried out. This approach proposes a ‘paradigm shift’ in clinical genetics.

Global prevalence of consanguineous unions. Consanguinity has deep roots in many cultures and it is impossible to interfere/intervene from the outside without first understanding why people engage in cousin marriages. Image source URL: www.consang.net/

Global prevalence of consanguineous unions. Consanguinity has deep roots in many cultures and it is impossible to interfere/intervene from the outside without first understanding why people engage in cousin marriages. Image source URL: http://www.consang.net/

Consanguineous unions occur very rarely in Western countries for a variety of sociological (e.g. cultural, negative media coverage) and statistical reasons (e.g. smaller families means fewer cousins at similar age), but the complete opposite is true in certain regions of the world where union of kin is seen as the default choice. Conservative estimates predict that approximately one-sixth of the world’s population (a figure of 1.1 billion is proposed by the Geneva International Consanguinity Workshop Report) live in highly consanguineous regions; and also another one-sixth falls into the ‘unknown’ category – reflecting the need for further research. Historically, consanguineous unions were also common amongst the elite in the UK (up to mid-19th century, including Charles Darwin), the Pharaohs and the Royal families of Europe (e.g. Habsburgs).

Views of main religions towards consanguineous marriages. NB: Where first-cousin marriages are allowed, lower levels of consanguinity are also allowed. Image Source: Copy-pasted from my own PhD thesis

The increase in the probability of a mutation being homozygous will depend on the level of relatedness between the parents. For example, approximately 6.25% of mutations are expected to be homozygous in the offspring of first cousins. This figure would be (near) 0% in the offspring of outbred individuals. Genetically, this is the main difference between union of kin and union of unrelated individuals. We all have many disease-causal mutations in our genomes (but in heterozygous state, i.e. one normal copy and one mutated copy) and different kinds of mutations are out there in all populations. However because these mutations will be very rare or are unique to you or your family, they do not get to meet their counterpart when you have offspring with an unrelated individual. Therefore the mutation’s homozygous effects are never observed. This is why rare autosomal recessive disorders are almost always seen in consanguineous offspring.

This difference in homozygosity levels is also one of the main reasons behind the necessity of studying consanguineous individuals and populations. These studies can turn unfortunate events (e.g. disorder in families) to a great use for medical sciences. Not only will identifying a disease-causal mutation help with diagnostics, they can enable scientists to understand what certain genes do and help us understand why the gene causes that disease. Rare instances can be highly informative about preventable outcomes relevant to the whole population. For example, had more notice been taken in the 1980s of the proof which familial hypercholesterolemia provided for the causal role of cholesterol in coronary heart disease (CHD), high cholesterol intake would have been better addressed for the nation a decade sooner. To provide numbers, CHD is still the UK’s biggest killer causing over 80 thousand deaths a year, thus paying more attention to information that was coming from studies of consanguineous unions could have saved thousands of lives just in this single case.

Given the advancements in genetic diagnostics (e.g. huge decreases in costs of DNA sequencing), screening for all known mutations will become feasible in the near future for everybody – and identifying disease-causal mutations will become even more useful for all of us. Our genomes are constantly being mutated and my approach will enable a much broader understanding of our genome by observing these mutations’ homozygous effects. Finally, rather than discourage (See link for an example) consanguineous marriages totally (not feasible in the foreseeable future due to many socio-economic and cultural reasons), for those willing to marry a cousin, screening for previously identified mutations will help these couples take more informed decisions.

consanguinity factors culture socio-economic

Factors influenced by consanguinity and culture. Image Source: Copy-pasted from my own PhD thesis (hence the Figure 1.10)

Key reference:

A. Mesut Erzurumluoglu, 2016. Population and family based studies of consanguinity: Genetic and Computational approaches. PhD thesis. University of Bristol.

Erzurumluoglu AM et al, 2016. Importance of Genetic Studies in Consanguineous Populations for the Characterization of Novel Human Gene Functions. Annals of Human Genetics, 80: 187–196.

 

PS: Whilst the media is mostly responsible for portraying consanguinity the way they understand (and with more contrast added on of course), they could be forgiven as the genetic effects of consanguinity is not fully understood amongst geneticists either, especially in the field of complex trait genetics – thus the extra incentive for studying them.

Read Full Post »

Peace is the only way forward! (Image from www.israellycool.com)

Peace is the only way forward – for both sides! (source URL: www.israellycool.com)

A few hate-driven Palestinians (or whoever they are) fire rockets to Israel aiming to kill their citizens. Israel has the right to find and punish them (and only them!). However, what Israel does is go out and kill civilians (including many children and women) in return by using weapons of mass destruction. Now tell me what the difference is between Israel (a state) and those few brainless radicals. I really can’t see the difference in the way they act. Surely a state has to act differently than a bunch of terrorists! We must be against anyone, any group and any state who kills civilians! It doesn’t matter who they are or what they claim to represent! Terrorism (and killing civilians) has no religion or ideology!

Graffiti in Bristol, UK - Palestinian people deserve freedom and independence just like Israel does

Graffiti in Bristol, UK – Palestinian people deserve freedom, peace and independence just like Israel

Belfast International Peace Murals

Belfast International Peace Murals

Both sides must take a long hard look at themselves. As long as these atrocities carry on (on both sides) and we keep turning a blind eye, there’ll never be peace in the Middle East; and therefore the World. For peace to ever become sustainable, inter-faith and inter-cultural dialogue is a must! People must learn and agree to disagree! I do not want to see one more life ending prematurely due to terrorism (by radical groups or by states) – on both the Palestinian and the Israeli side; or any other side! One life is one too many!

The greatest way to avenge your enemy is by learning to forgive” – Quote from the documentary

Read Full Post »

Abstract

Muslim scholars’ contribution to Life, Earth and Social sciences is usually overlooked today due to the ‘Golden age’ of the Islamic world coinciding with the ‘Dark Ages’ of Europe. This leads to an understanding within the general public that Muslims did not contribute to Science at all; sadly this conception is also shared by many Muslims. So if today’s Muslims share the wrong belief that their ancestors have achieved nothing in the past, how can they themselves then go on and become successful in the present and future?

Logo of '1001 Inventions of Muslims' exhibition

Logo of ‘1001 Inventions of Muslims’ exhibition

Due to the curious nature of mankind, it was not easy to ignore the celestial bodies of different sizes and colours which appeared in the sky during the day and night for ancient civilisations and mankind have been in awe of these shiny things throughout history and tried their utmost to understand the vastness of space and the infinitely looking numbers of celestial bodies which were visible to the human eye. They tried to comprehend what they were doing there and what purpose(s) were they serving. Especially the movements, positioning and the resulting effects of the sun, the moon and nearby stars were intensively observed to make sense of seasons, Earth’s movements and mark the passing of days, months and years.

Following the decline of the Roman Empire, Europe entered a period called the ‘Dark Ages’ by Western scholars to emphasize the cultural and economic decline that occurred in the continent. However it is usually misunderstood by the public as an age of stand-still in terms of science, economy and health issues which encapsulated all the world populations – which of course was not the case. What was supposedly a Dark Age for Europe was when there were significant improvements and discoveries in Astronomy, Mathematics and Medical sciences just a few thousand kilometers away in the Middle East, where Arab (and/or Arabic speaking) scholars were using what the Ancient Greek and Far East scholars had observed in the past to build upon and find new things which would transform the life standards of mankind and increase the understanding of the natural world.

As far as Astronomy (not forgetting other areas such as mathematics and biology) was concerned, Arab (and/or Arabic speaking) astronomers of the era were regarded as the masters of the field. Their achievements – which are usually overlooked by today’s academics, and not surprisingly, by the public, have played a crucial role in the development of this enthralling science which existed since humankind set foot on earth.

Ancient Greek scientists had observed that the North Star (which is named Polaris by modern scientists today) appeared lower in the sky as a person traveled to the South and thus made suggestions that the Earth could be spherical. Muslim scholars, inspired by the Quran and the teachings of the Prophet, set on a journey to understand the natural world to get to know the creations of the Creator better started to research the literature produced by past scholars. Only a few centuries after the founding of Islam (in 610 AD), the Bedouin Arabs of the past became the great thinkers of the time and Arabic became the ‘Language of Science’ and most world renowned scholars of the time knew or learnt Arabic to be able communicate with the best of the best of their time in the ‘House of Wisdom’ in Baghdad. Nearly all available literature in the Sanskrit and Greek languages which contained a wealth of information about many sciences including Astronomy and mathematics, such as the one aforementioned about the North Star, would be translated into Arabic and made available in many libraries (especially at the House of Wisdom) across the Islamic empire (The Abbasid Caliphate was the Islamic state of the time). The available information would then be discussed amongst the greatest scholars of the time. Also the rulers (called ‘Caliphs’ in the Muslim World) were usually interested in natural sciences and this would mean a lot of encouragement to scholars in term of high salaries, bonuses and higher social status amongst the public.

However, Astronomy stood out from other sciences in Islamic states because it was related to the worshiping of God, Allah. Muslims have the obligation of facing the Kaaba during the daily prayers and doing that requires the pinpointing of the direction of Mecca from any location. It went as far as mosques employing professional astronomers (called muwaqqits), who helped Muslims pray to the right direction and at the right time during the day. Muwaqqits were also important when determining the start of the month of Ramadan and certain religious dates such as the Hajj period and how to get there through the shortest possible route.

Baghdad (capital of present day Iraq) became the centre for scientists in the 9th century and many libraries and observatories were present. The Caliph would have his own dedicated group of mathematicians, geographers and medical scientists who would analyse past literature and find new cures, calculate distances and how long it would take to a certain place. Naturally, this encouragement of scientists bared its fruits and in the 11th century. Abu Rayhan al- Biruni made remarkable conclusions by mentioning that planets were possibly moving elliptical orbits rather than circular ones. Muslim scholars even made calculations about the Earths circumference by walking in the Syrian desert until they realised that the North Star had moved by one degree according to their vision and then calculated the value of 37369 km which was correct by over 90% (True figure is just over 40000 km). They even started to challenge theories which had held on for centuries using the Quran as a platform to build upon. One example of this occurred thorugh Fakhr al-Din al-Razi, who lived between 1149–1209, rejected the Aristotelian and Avicennian notion of the Earth’s centrality within the universe in his book Matalib (Volume 4), but instead argued that there are “a million worlds (alfa alfi ‘awalim) beyond this world such that each one of those worlds be bigger and more massive than this world as well as having the like of what this world has.” To support his argument, he even cited the Qur’anic verse (Surat-ul Fatiha, verse 1), “All praise belongs to God, Lord of the Worlds,” emphasizing the term “Worlds”; thus making other scientists think outside the box and let them know what he thinks about the Earth being the center of the universe (and indicating also the possibility of multiple universes might have existed, again which was in contrast with the common views of that age).

Another example of a Muslim genius in the era was Khawaja Muḥammad ibn Muḥammad ibn Ḥasan Ṭūsī (more commonly known as Nasireddin) who lived from 1201 to 1274 and born in the city of Tus, Khorasan (in Iran) who has about 150 works in a variety of fields including Astronomy, Biology and Mathematics. He was very influential when convincing the Mongol ruler Hulagu Khan (another ruthless leader, one of the grandsons of Genghis Khan) to build an observatory for establishing accurate astronomical tables for better astrological predictions. He was the first to publish a work on Trigonometry independent of astronomy and geometry effectively establishing it as a separate field. He provided proof for the ‘law of sines’ for plane and spherical triangle (which was used by Copernicus also) is still taught today to Mathematics students. There could be an encyclopedia of books written just about him and his works. But how many people know the name of this true great let alone his works?

Sophisticated (and expensive) instruments from astrolabes to quadrants, sextants to sundials were made available for use by the state to any researcher with credibility. Astrolabes – which were succeeded by sextants afterwards, have been labelled as the most important astronomical device before the telescope. They came very close to solving the inconsistencies found in Claudius Ptolemaeus’ model (which has become nearly synonymous with the superseded Geocentric model) and couldn’t find the ultimate correct answer due to uncharacteristically not being able to start without any assumptions in this occasion (due to wrong evidence from past literature being shown as facts) and by making the wrong assumption that the Earth lay at the centre of planetary orbits.

In a period dismissed by most scientists today as the ‘Dark Ages’ where supposedly nothing blossomed in terms of intellectual and academic purposes, there were near miraculous discoveries in the Islamic world and the Middle East. But it is more saddening to see that even the Muslims do not know and/or acknowledge the achievements of their ancestors such as Al-Biruni, Ibn Sina (known as Avicenna in the West), Ibn Rushd (aka Averroes), Al Khwarizmi (who is called the father of Algebra), Abu Al-Qasim Al-Zahrawi (aka Albucasis – most renowned surgeon of his time), Al-Kindi, Ibn Khaldun (famous historian and philosopher – best known for his book ‘Muqaddimah’) etc. The list can go on forever so while even when most of the Muslim world does not recognise the abovementioned names, no one can blame the non-Muslims for doing the same (these comments are general and does exclude the few distinguished and objective academicians of today and the past). The new generation of Muslims must be encouraged to learn from their ancestors, acknowledge the things they have achieved and combine it with today’s knowledge and make it their ultimate goal to understand the physical world just like they did in order to understand the creation (and the Creator) and carry on being in awe of the things he has created. The early Islamic states have paid enormous attention to natural and life-sciences as did the Ottomans and thus were the global forces (in terms of knowledge, economy and political power) of their times. Isn’t it time Muslims did the same?

A few Famous Quotes Inspiring Muslims to Seek knowledge and Contribute to Sciences

“Travel through the lands (Earth) and try to understand (observe) how He began creation.” [Holy Quran, The Spider, 29:20]

“Have those who disbelieved not considered that the heavens (sky) and the Earth/land were a joined entity, and We separated them; and made every living thing from water?” [Holy Quran, The Prophets, 21:30]

“Whomever teaches me a word, I will be his/her slave for 40 years” [Fourth Caliphate of Islam: Ali bin Abu Talib]

“Be a teacher, or a student, or a listener, or one who encourages seeking knowledge; but never be the fifth, or you will be perished” [Prophet Muhammad]

“(Useful) Knowledge is like a Muslim’s lost property. They must seek to find it!” [Prophet Muhammad]

“The death of an Alim (scholar) is the death of the Alam (world/universe/creation).” [Prophet Muhammad]

References (and Further Reading)

  1. Adi Setia (2004). “Fakhr Al-Din Al-Razi on Physics and the Nature of the Physical World: A Preliminary Survey”. Islam & Science, Winter 2004. findarticles.com/p/articles/mi_m0QYQ/is_2_2/ai_n9532826/
  2. Berggren, J. Lennart (2007). “Mathematics in Medieval Islam”. The Mathematics of Egypt, Mesopotamia, China, India, and Islam: A Sourcebook.       Princeton University Press. ISBN 978-0-691-11485-9.
  3. David A. King (1993). Astronomy in the Service of Islam.  Aldershot, U.K. Variorum
  4. George Saliba (1994), A History of Arabic Astronomy: Planetary Theories During the Golden Age of Islam, p. 233–234, 240. New York University Press, ISBN 0-8147-8023-7
  5. John David North (2008). Cosmos: An Illustrated History of Astronomy and Cosmology. University of Chicago Press. ISBN: 0226594416
  6. Jonathan Lyons (2009). The House of Wisdom. Bloomsbury. ISBN 1596914599.
  7. Ragep, F. Jamil (2001). “Freeing Astronomy from Philosophy: An Aspect of Islamic Influence on  Science”. Osiris, 2nd Series 16 (Science in Theistic Contexts: Cognitive Dimensions), pp49–71. doi:10.1086/649338.
  8. Encyclopaedia Britannica
  9. Science and Islam by Ehsan Masood – A nice read!

PS: Terrorist groups have unfortunately blackened the name and the beautiful face of Islam. We must take a stand against all oppressors: whether they are carried out by radical groups such as the Al-Qaeda or ISIS, or by states (e.g. Chinese oppression on Uyghur Turks, Israel’s oppression on Palestinians) – through diplomacy, boycotts, and/or military intervention (without causing any more civilian casualties, final option!).

We must realise that every ideology-belief-religion (e.g. Fascism, Marxism, Christianity, Social Darwinism) has been – and some are still being (e.g. Capitalism, Tribalism) – used to suit a political agenda of a few rulers/elite class (whether we realise it or not). These (mentally, spiritually) corrupted individuals/groups have caused nothing but oppression and/or death to millions. Unfortunately the same agenda has now been put into play via the use of wrong interpretations of Islam (e.g. Wahhabism) to spur on uneducated, alienated and ‘lost’ youth to join the ranks of these supposedly “Islamic” terrorist groups. There is no terrorism in Islam. As the highly respectable scholar Fethullah Gulen put it: “A Muslim cannot be a terrorist and a terrorist cannot be a Muslim!”

PPS: We must stop calling the science carried out by Muslims in the golden ages as “Islamic Science”. Science is an objective field which belongs to nobody, it belongs to all of us. There is no Islamic, Christian or Jewish Science.

We must also stop saying Muslims do not contribute to science today. That is not true. You will see a Muslim scientist in almost all (large scale) labs and/or projects in virtually all areas of science. However, the problem is that our ‘brains’ are not valued in our ‘not-so-Islamic-but-Islamic-in-name’ countries thus we serve countries which provide us a platform to concentrate on our research. These are the Western countries! Thus (rightly so!) these countries also get all the credit…

Read Full Post »

This article was written for the lay audience in Hiyerarşi (Hierarchy) magazine in Turkey (July 2012).

Türkçesi: Yeni Teknolojik Gelişmelerin Işığında Akraba Evlilikleri (Hiyerarşi dergisi, Temmuz 2012)

Page 1

First page (page 25)

Page 2

2nd page (page 26)

Page 3

3rd page (page 27)

Page 4

Last page (page 28)

If you have any questions, please feel free to contact me…

 

Key references:

1- A. Mesut Erzurumluoglu, 2015. Population and family based studies of consanguinity: Genetic and Computational approaches. PhD thesis. University of Bristol.

2- Erzurumluoglu et al, 2016. Importance of Genetic Studies in Consanguineous Populations for the Characterization of Novel Human Gene Functions. Annals of Human Genetics.

Read Full Post »